Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering


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Documentation for package ‘projectR’ version 1.22.0

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alluvialMat alluvialMat
AP.RNAseq6l3c3t CoGAPS patterns and genes weights for p.RNAseq6l3c3t
aucMat aucMat
bonferroniCorrectedDifferences bonferroniCorrectedDifferences
cluster2pattern Generic cluster2pattern function
cluster2pattern-class cluster2pattern
cluster2pattern-method Generic cluster2pattern function
clusterPlotR Generic clusterPlotR function
clusterPlotR-method Generic clusterPlotR function
correlateR correlateR
correlateR-class correlateR
CR.RNAseq6l3c3t CogapsResult object for p.RNAseq6l3c3t
cr_microglial CogapsResult object for microglial_counts
geneMatchR Generic geneMatchR function
getTSNE getTSNE
getUMAP getUMAP
glial_counts log-normalized count data from astrocytes and oligodendrocytes in the p6 mouse cortex.
initialize-method Constructor for cluster2pattern
initialize-method Constructor for correlateR
initialize-method Constructor for rotatoR
intersectoR Generic intersectoR function
intersectoR-method Generic intersectoR function
map.ESepiGen4c1l RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
map.RNAseq6l3c3t RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
microglial_counts log-normalized count data from microglial cells in the p6 mouse cortex.
multivariateAnalysisR Generic multivariateAnalysisR function
multivariateAnalysisR_seurat_test Truncated Seurat Object with latent space projection done to unspecified cells in different stages for multivariateAnalysisR analysis
p.ESepiGen4c1l RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
p.RNAseq6l3c3t RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pd.ESepiGen4c1l RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
pd.RNAseq6l3c3t RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pdVolcano pdVolcano
plotConfidenceIntervals plotConfidenceIntervals
plotVolcano plotVolcano
projectionDriveR projectionDriveR
projectR Generic projectR function
projectR-method Generic projectR function
retinal_patterns CoGAPS patterns learned from the developing mouse retina.
rotatoR rotatoR
rotatoR-class rotatoR