Risa-package |
Risa package overview |
AssayTab-class |
Class '"AssayTab"', a class for maintaing the information of AssayTab |
getAnnotatedDataFrameAssay |
Retrieves an AnnotatedDataFrameAssay. |
getAssayRawDataFilenames |
~~ Methods for Function 'getAssayRawDataFilenames' in Package 'Risa' ~~ |
getAssayRawDataFilenames-method |
~~ Methods for Function 'getAssayRawDataFilenames' in Package 'Risa' ~~ |
getAssayRawDataFilenames-methods |
~~ Methods for Function 'getAssayRawDataFilenames' in Package 'Risa' ~~ |
getExpressionSet |
Retrieves an ExpressionSet for a DNA microarray assay. |
getMIAMEMetadata |
Retrieves the MIAME information about a microarray experiment |
getMicroarrayAssayFilenames |
Listing filenames of microarray-based asssay from an ISAtab dataset. |
getMSAssayFilenames |
Retrieves a vector with the assay filenames corresponding to mass spectrometry. |
getRawDataFilenames |
~~ Methods for Function 'getRawDataFilenames' in Package 'Risa' ~~ |
getRawDataFilenames-method |
~~ Methods for Function 'getRawDataFilenames' in Package 'Risa' ~~ |
getRawDataFilenames-methods |
~~ Methods for Function 'getRawDataFilenames' in Package 'Risa' ~~ |
getStudyFilename |
Retrieves the study filename to which an assay.filename corresponds. |
ISATab-class |
Class '"ISATab"', a class for maintaing ISATab information |
isMicroarrayAssay |
Determines if an assay is microarray-based or not. |
isMSAssay |
Indicates if an assay filename corresponds to a mass spectrometry assay. |
MicroarrayAssayTab-class |
Class '"AssayTab"', a class for maintaing the information of AssayTab |
MSAssayTab-class |
Class '"AssayTab"', a class for maintaing the information of AssayTab |
NMRAssayTab |
Class '"AssayTab"', a class for maintaing the information of AssayTab |
processAssayXcmsSet |
Build an xcmsSet object given a mass spectrometry assay and considering all factors defined |
processAssayXcmsSet.1factor |
Build an xcmsSet object given a mass spectrometry assay and considering the first factor defined |
readISAtab |
Reads an ISAtab dataset into an R object. |
Risa |
Risa package overview |
SeqAssayTab |
Class '"AssayTab"', a class for maintaing the information of AssayTab |
suggestBiocPackage |
Suggest Bioconductor pacakges |
updateAssayMetadata |
Update metadata into the assay file |
write.assay.file |
Write an Assay File from the ISA-Tab dataset |
write.investigation.file |
Writes the Investigation File of an ISA-Tab dataset |
write.ISAtab |
Write an ISA-Tab dataset |
write.study.file |
Write a Study File of an ISA-Tab dataset |
[-method |
Class '"AssayTab"', a class for maintaing the information of AssayTab |
[-method |
Class '"ISATab"', a class for maintaing ISATab information |
[<--method |
Class '"AssayTab"', a class for maintaing the information of AssayTab |
[<--method |
Class '"ISATab"', a class for maintaing ISATab information |